PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P00950_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LSD
Protein Properties Length: 179aa    MW: 18780 Da    PI: 8.4442
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P00950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.81.5e-121236125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C+gCr++L YPrGA sV+Ca+C t+
  GSMUA_Achr7P00950_001 12 CSGCRNVLLYPRGAASVCCAICSTI 36
                           **********************997 PP

2zf-LSD136.48.8e-125175125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           CggCrtlL+   GA+ VRC++C+t+
  GSMUA_Achr7P00950_001 51 CGGCRTLLMHVHGATTVRCSCCNTI 75
                           ***********************97 PP

3zf-LSD1474.1e-1589113125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            Cg+C+t+L+YP+GApsV+Ca+C+ V
  GSMUA_Achr7P00950_001  89 CGHCHTTLMYPYGAPSVKCAICHYV 113
                            **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.2E-12939IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-101236IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.5E-134877IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-105175IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.8E-1087116IPR005735Zinc finger, LSD1-type
PfamPF069434.5E-1489113IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MISSGMQGQL VCSGCRNVLL YPRGAASVCC AICSTITTVP PPGMEMAQLI CGGCRTLLMH  60
VHGATTVRCS CCNTINITRP VNQVANVRCG HCHTTLMYPY GAPSVKCAIC HYVTNVGQMD  120
GMRLPVSTMH RLNGPTPAPP SASASQVQNT TVVVENPMSV DESGKLVSNL VVGVTTGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408561.11e-127PREDICTED: protein LOL3-like isoform X1
SwissprotQ6ASS25e-76LOL3_ORYSJ; Protein LOL3
TrEMBLM0TDN51e-127M0TDN5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P00950_0011e-126(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.76e-61LSD family protein